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kundajelab / atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline
BSD 3-Clause "New" or "Revised" License
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messy row labels on "Comparison to Roadmap DNase" plot #118

Closed icanwinwyz closed 6 years ago

icanwinwyz commented 6 years ago

I ran the pipeline smoothly but got the messy row labels on "Comparison to Roadmap DNase" plot from individual sample report. Please find the screen shot attached. Thanks.

screen shot 2018-05-29 at 9 50 00 am

It took me 3 days to finish the whole pipeline. Should I rerun it again to only fix this plot problem?

leepc12 commented 6 years ago

Fixed. please update your pipeline and ataqc module

$ cd [PIPELINE_GIT_DIR]
$ git pull origin master
$ cd ataqc
$ git pull origin master
icanwinwyz commented 6 years ago

It took me 3 days to finish the whole pipeline. Should I rerun it again to only fix this plot problem?

leepc12 commented 6 years ago

you can delete odl ATAQC reports with the following command:

$ cd [YOUR_OUTPUT_DIR]
$ find -name *_qc.html -delete

This command will recursively DELETE all *_qc.html files on your output directory.

Delete all ATAQC HTML report and simply run the same command line then pipeline will automatically resume from ATAQC step.