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kundajelab / atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline
BSD 3-Clause "New" or "Revised" License
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Location of cromwell-34.jar #146

Closed imk1 closed 5 years ago

imk1 commented 5 years ago

The SLURM tutorial (https://github.com/kundajelab/atac-seq-pipeline/blob/master/docs/tutorial_slurm.md) says that one should cd into atac-seq-pipeline before downloading cromwell-34.jar. However, based on my experience running the pipeline, it seems like it might be necessary to have a copy of cromwell-34.jar in my home directory (the super-directory of atac-seq-pipeline). Is that correct? If so, it would be great if this could be added to the SLURM tutorial's installation instructions. Thanks!

imk1 commented 5 years ago

It looks like the pipeline actually does work with cromwell-34.jar in the atac-seq-pipeline directory. I apologize for posting this unnecessarily.