leepc12
commented
6 years ago There was an announcement about this in the google group discussion channel a few weeks ago.
https://groups.google.com/forum/#!topic/klab_genomic_pipelines_discuss/NQ8cZdQZMo8
Please use -auto_detect_adapter.
Thanks,
Jin
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On Tue, Oct 17, 2017 at 10:01 AM, PocketChangeJ notifications@github.com wrote:
Hi guys, I've just updated the pipeline and testing on one of my previously analyzed samples to be sure all works ok - noticed my adapters are not getting trimmed... == checking adapters to be trimmed ... Rep1 R1 adapters (PE) : 00: no adapter specified. Rep1 R2 adapters (PE) : 00: no adapter specified. Rep2 R1 adapters (PE) : 00: no adapter specified. Rep2 R2 adapters (PE) : 00: no adapter specified.
The pipeline just proceeds to straight to bowtie mapping.. Thank you!
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jusu-E404
Hi guys, I've just updated the pipeline and testing on one of my previously analyzed samples to be sure all works ok - noticed my adapters are not getting trimmed...
== checking adapters to be trimmed ... Rep1 R1 adapters (PE) : 00: no adapter specified. Rep1 R2 adapters (PE) : 00: no adapter specified. Rep2 R1 adapters (PE) : 00: no adapter specified. Rep2 R2 adapters (PE) : 00: no adapter specified.The pipeline just proceeds to straight to bowtie mapping.. Thank you!