This is the error:
File "/home/users/surag/oak/miniconda3/envs/basepairmodels/lib/python3.6/site-packages/basepairmodels/cli/interpret.py", line 192, in data_func return [dinuc_shuffle(model_inputs[0], args.num_shuffles, rng)] + \ TypeError: dinuc_shuffle() takes from 1 to 2 positional arguments but 3 were given
Followed installation instructions as specified in the docs with fresh conda env. It seems to install version 0.6.10.0 of deepLIFT. That version takes in only two arguments.
This is the error:
File "/home/users/surag/oak/miniconda3/envs/basepairmodels/lib/python3.6/site-packages/basepairmodels/cli/interpret.py", line 192, in data_func return [dinuc_shuffle(model_inputs[0], args.num_shuffles, rng)] + \ TypeError: dinuc_shuffle() takes from 1 to 2 positional arguments but 3 were givenFollowed installation instructions as specified in the docs with fresh conda env. It seems to install version
0.6.10.0of deepLIFT. That version takes in only two arguments.https://github.com/kundajelab/deeplift/blob/d0d5f3606b96ea6803b9c8bcb6c3b8e1f4b99300/deeplift/dinuc_shuffle.py#L41
Resolved by
pip instal --upgrade deeplift. Perhaps specify version deepLIFT 0.6.13 or above inrequirements.txt?