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kundajelab / basepairmodels

MIT License
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Integrate new batch generator that combines foreground and background loci #19

Open zahoorz opened 2 years ago

zahoorz commented 2 years ago

----- for the generator

  1. The input json will have new field for background loci
  2. The user will specify #samples for foreground and background (-1 for all)
  3. The background_only option will dictate whether the bed file in the background_loci field of the input json will have weight as zero or one for mnll loss (e.g. in case of training background model the weight for background_loci will be 1)

---- for integration

  1. Add command line argument to pass background_only flag to the batch generator