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kundajelab / bpnet

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
http://bit.ly/bpnet-colab
MIT License
141 stars 33 forks source link

input BED file needs to be BED3, not BED6 #1

Closed mlweilert closed 5 years ago

mlweilert commented 5 years ago

The TsvReader breaks when the dataspec.yaml file is provided with BED files that contain 6 columns because the naming convention does not match the expectations of that object. When converted to a BED3, the TsvReader works fine. Thoughts?

Avsecz commented 5 years ago

Oh true. I will fix this by subsetting the bed file.