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kundajelab / bpnet

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
http://bit.ly/bpnet-colab
MIT License
141 stars 33 forks source link

current pysam version installs incorrect libssl #21

Closed snystrom closed 3 years ago

snystrom commented 3 years ago

In the current conda-env.yml the pysam version corresponds to one that incorrectly pulls the wrong libssl from conda. This causes an error when training indicating libcrypto0.1.0 does not exist. The issue can be fixed by using a later version. pysam==0.15.3 seems to do the trick.

Avsecz commented 3 years ago

Thanks! Updated the conda file. Please let me know if the new conda file works for you.

snystrom commented 3 years ago

Works!