Closed liameihao closed 3 years ago
and chip-seq can not download,
may add:
rule download_fasta_1: """Download an individual file """ output: f = 'data/mm10_no_alt_analysis_set_ENCODE.fasta' params: base_url = base_url shell: "wget {params.base_url}/mm10_no_alt_analysis_set_ENCODE.fasta -O {output.f}"
rule chip_seq: input: [os.path.normpath(os.path.join('data', f)) for f in DataSpec.load('chip-nexus/dataspec.yml').list_all_files(include_peaks=True)]
should be: for f in DataSpec.load('chip-seq/dataspec.yml').list_all_files(include_peaks=True)]