search

kundajelab / bpnet

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
http://bit.ly/bpnet-colab
MIT License
141 stars 33 forks source link

preds.neg.bw and preds.pos.bw #42

Closed kanglizhu closed 2 years ago

kanglizhu commented 2 years ago

Dear developers,

I want to predict all the potential CTCF-binding sites in the human genome. The input file is the chip-seq file from one cell line.

Using "bpnet export-bw", I got two bw files: the preds.neg.bw and preds.pos.bw .

Using "bpnet cwm-scan", i got one file "motif-instances.tsv".

I'm not sure which file is the exact file I needed. I would highly appreciate it if you could point me to the correct direction!

Thank you so much,

kangli zhu