kundajelab / bpnet

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
http://bit.ly/bpnet-colab
MIT License
141 stars 33 forks source link

Notebook not working #45

Open songzeji opened 2 years ago

songzeji commented 2 years ago

Hi, when running the first cell (install dependencies) of the tutorial notebook I encountered the following error message:

ERROR: Cannot install bpnet==0.0.1, bpnet==0.0.10, bpnet==0.0.11, bpnet==0.0.12, bpnet==0.0.13, bpnet==0.0.14, bpnet==0.0.15, bpnet==0.0.16, bpnet==0.0.17, bpnet==0.0.18, bpnet==0.0.19, bpnet==0.0.2, bpnet==0.0.20, bpnet==0.0.21, bpnet==0.0.22, bpnet==0.0.23, bpnet==0.0.3, bpnet==0.0.4, bpnet==0.0.5, bpnet==0.0.6, bpnet==0.0.7, bpnet==0.0.8 and bpnet==0.0.9 because these package versions have conflicting dependencies. ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/user_guide/#fixing-conflicting-dependencies ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. google-colab 1.0.0 requires tornado~=5.1.0, but you have tornado 6.2 which is incompatible. and ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. google-colab 1.0.0 requires tornado~=5.1.0, but you have tornado 6.2 which is incompatible. flask 1.1.4 requires Jinja2<3.0,>=2.10.1, but you have jinja2 3.1.2 which is incompatible. I would really appreciate if you could look into this!

jiangdada1221 commented 1 year ago

Same here

evanseitz commented 1 year ago

same. !pip install bpnet is no longer working in colab