phantompeakqual Error in names(cc) < names(otl) :attempt to set an attribute on NULL

kundajelab / chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

BSD 3-Clause "New" or "Revised" License

105 stars 40 forks source link

phantompeakqual Error in names(cc) < names(otl) :attempt to set an attribute on NULL #12

Open crazyhottommy opened 7 years ago

crazyhottommy commented 7 years ago

hi, I run phantompeakqual on my duplicates removed bam files and got an error shown in the title. later, I re-run the same command but on bam files before samtools rmdup -s, it worked fine.

seems that samtools rmdup did something phantompeakqual did not like.

Thanks, Tommy