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kundajelab / chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline
BSD 3-Clause "New" or "Revised" License
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Can't download hg19 genome data #44

Open tfchipchip opened 6 years ago

tfchipchip commented 6 years ago

Hello,

There is an issue downloading hg19 genome data. Stuck at "HTTP request sent, awaiting response..." hg38 can be downloaded.

Can you please solve? Thanks!

leepc12 commented 6 years ago

Can you post a full log here?

I think it's a temporary file hosting problem on UCSC. Do you still have the problem? I think it's working fine now.

tfchipchip commented 6 years ago

Downloading files... --2018-07-20 12:55:31-- http://hgdownload.cse.ucsc.edu/goldenpath/hg19/encodeDCC/referenceSequences/male.hg19.fa.gz Resolving hgdownload.cse.ucsc.edu (hgdownload.cse.ucsc.edu)... 128.114.119.163 Connecting to hgdownload.cse.ucsc.edu (hgdownload.cse.ucsc.edu)|128.114.119.163|:80... connected. HTTP request sent, awaiting response...

I tried just now- yes, I still have problem downloading. I believe it's the issue on the UCSC end too. Any other alternative way to download hg19 if this keeps having problems?

Thanks!