chrombpnet_deepshap command not found

kundajelab / chrombpnet

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

https://github.com/kundajelab/chrombpnet/wiki

MIT License

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chrombpnet_deepshap command not found #183

Closed saninta0212 closed 8 months ago

saninta0212 commented 9 months ago

I am trying to generate deepSHAP values and run TF-modisco on the deepSHAP contribution scores. However, running script from here (https://github.com/kundajelab/chrombpnet/tree/master/chrombpnet/evaluation/interpret) is giving me an error: chrombpnet_deepshap: command not found. I could run modisco report and the other commands but not the chrombpnet_deepshap. Some help on this would be appreciated!

panushri25 commented 8 months ago

Sorry that README is outdated. I will remove it, please follow the tutorial links here - https://github.com/kundajelab/chrombpnet/wiki