Plugging peak calls from ArchR

kundajelab / chrombpnet

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

https://github.com/kundajelab/chrombpnet/wiki

MIT License

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Plugging peak calls from ArchR #209

Open Brawni opened 1 month ago

Brawni commented 1 month ago

Dear chrombpnet devs,

Thanks for this package I'm very excited to trying it out! I'm working on scatac-seq and wondering whether I could input the peaks called from ArchR to the model or I should recall them? Through ArchR MACS2 callpeaks function is specified with an offset of -75 bp and extsize of 150bp. Is this ok?