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kundajelab / chrombpnet

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
https://github.com/kundajelab/chrombpnet/wiki
MIT License
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how to extract contribution scores using genomic positions #213

Open Brawni opened 1 week ago

Brawni commented 1 week ago

Hello there,

What would be the best strategy to extract contribution scores associated with genomic positions of a given TF that doesnt show up in TFmodisco reports? I was thinking to use genomic positions computed by chromVAR to do that but not sure how to query the output files. Also, is it this even a good idea?

Thank you