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kundajelab / dfim

Deep Feature Interaction Maps (DFIM)
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Error while trying to run embedded_motif_interaction_example.py #4

Closed anushree-a closed 5 years ago

anushree-a commented 5 years ago

Tried running the embedded motif interaction code for my own dataset (simulated as per the guidelines in the supplementary paper) and encountered the following error:

Traceback (most recent call last): File "embedded_motif_interaction_example.py", line 162, in reference_gc=0) File "build/bdist.linux-x86_64/egg/dfim/core.py", line 467, in compute_importance AttributeError: 'module' object has no attribute 'blobs'

I am using the following software versions - Tensorflow version = 1.9.0 Keras version = 2.2.4 Deeplift version = 0.6.6.2

Please let me know how to work around it. Thank you in advance for your time!

pgreenside commented 5 years ago

Thanks for letting me know. I wrote this example with Deeplift 0.4.0 and the structure of the Deeplift code base has changed since then. I would use the older, compatible version of Deeplift or otherwise you can update compute_importance() to respect the new structure (i.e. using deeplift.layers instead of deeplift.blobs). I will try to update the example soon.