migrated from pysam to pyfaidx - Githubissues

kundajelab / genomelake

Simple and efficient access to genomic data for deep learning models.

BSD 3-Clause "New" or "Revised" License

43 stars 17 forks source link

migrated from pysam to pyfaidx #19

Open Avsecz opened 6 years ago

Avsecz commented 6 years ago

closes https://github.com/kundajelab/genomelake/issues/18
replaced pysam with pyfaidx
removed pybedtools dependency
moved the main package imports into classes (pyBigWig, pyfaidx)

coveralls commented 6 years ago

Pull Request Test Coverage Report for Build 101

14 of 14 (100.0%) changed or added relevant lines in 3 files are covered.
No unchanged relevant lines lost coverage.
Overall coverage increased (+0.3%) to 90.476%

Totals
Change from base Build 86:	0.3%
Covered Lines:	152
Relevant Lines:	168

💛 - Coveralls

Avsecz commented 6 years ago

@jisraeli if you are happy with the PR, can you also make a release on bioconda?