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kundajelab / phantompeakqualtools

This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.
BSD 3-Clause "New" or "Revised" License
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Add to bioconda? #10

Closed karl616 closed 6 years ago

karl616 commented 6 years ago

Should this be added to bioconda?

If so, how modified is the SPP version? Would it be possible to make use of the SPP already in bioconda? In your atac-seq-pipeline, you use r-spp v1.13. Is that sufficient?

karl616 commented 6 years ago

In order to this, a license is needed. Is this something you have thought about?

akundaje commented 6 years ago

Good point. We'll add the license info to the GitHub.

On Tue, Jul 31, 2018, 5:38 AM Karl Nordström notifications@github.com wrote:

In order to this, a license is needed. Is this something you have thought about?

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leepc12 commented 6 years ago

@karl616 Thanks for your work, just added a license file. I am still working on the installation script for pipelines let's talk there.

karl616 commented 6 years ago

@leepc12 I'll try to keep my communication more centralized...

For reference, this is the pull request to add phantompeakqualtools to bioconda: https://github.com/bioconda/bioconda-recipes/pull/10171

karl616 commented 6 years ago

phantompeakqualtools is now merged in and available in bioconda. With the bioconda repository correctly configured it can be installed with:

conda install phantompeakqualtools

With that I'll close this issue.