Paper Analysis Code

[mreece13]

Main PR for the analysis code. Please leave comments, either broadly if something looks good to go, or on specific line(s) of code if you have suggestions for changes. Shiro and I will work through the suggested changes and implement them, then re-tag you to ask for another review.

[kuriwaki]

• Each figure needs to be exported as a PDF or JPG (let's do PDF, using ggsave()) and tables need to be produced as Excel files, using writexl::write_xlsx() (as well as the latex).
• I have created empty folders for figures and tables here (see figs/, tables/). The .gitignore will ignore the pdf and xlsx files, but the R code should be written to produce those outputs locally
• Please adapt each script so that it exports the PDF and Excel files. Please use the following format: figure_01.pdf, table_01.xlsx, table_02.xlsx, and so on

[jloffredo2]

• Each figure needs to be exported as a PDF or JPG (let's do PDF, using ggsave()) and tables need to be produced as Excel files, using writexl::write_xlsx() (as well as the latex).
• I have created empty folders for figures and tables here (see figs/, tables/). The .gitignore will ignore the pdf and xlsx files, but the R code should be written to produce those outputs locally
• Please adapt each script so that it exports the PDF and Excel files. Please use the following format: figure_01.pdf, table_01.xlsx, table_02.xlsx, and so on

gt doesn't produce an .xlsx files directly -- for now, save table with gtsave as .docx and we will manually make them .xlsx (it's an easy copy/paste)