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kusterlab / prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7
https://www.proteomicsdb.org/prosit/
Apache License 2.0
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Rescoring Error: "need at least one array to concatenate make" #40

Closed rababerladuseladim closed 4 years ago

rababerladuseladim commented 4 years ago

Hey, I am trying to rescore a MaxQuant result and get the following error: 

Traceback (most recent call last): 
File "oktoberfest/grpc_alignment.py", line 31, in <module> disable_progress_bar = True) 
File "/root/.pyenv/versions/3.6.0/src/prosit-grpc/prosit_grpc/predictPROSIT.py", line 133, in predict pred_object.predict(disable_progress_bar) 
File "/root/.pyenv/versions/3.6.0/src/prosit-grpc/prosit_grpc/PredObject.py", line 116, in predict disable_progress_bar=disable_progress_bar) 
File "/root/.pyenv/versions/3.6.0/src/prosit-grpc/prosit_grpc/PredObject.py", line 106, in send_requests predictions = np.vstack(predictions) 
File "<__array_function__ internals>", line 6, in vstack 
File "/root/.pyenv/versions/3.6.0/lib/python3.6/site-packages/numpy/core/shape_base.py", line 283, in vstack return _nx.concatenate(arrs, 0) 
File "<__array_function__ internals>", line 6, in concatenate 
ValueError: need at least one array to concatenate make: *** [calibration] Error 6
LLautenbacher commented 4 years ago

Could you provide us your task ID? Best, Ludwig

rababerladuseladim commented 4 years ago

Sure: A66FCCB2F25B7178399DFF78EAB575E3

LLautenbacher commented 4 years ago

Hi,

sorry for the late answer! I checked your job, you used an ITMS mass analyzer for acquiring your spectra. Since the available Prosit model was trained on FTMS data we only support FTMS data at the moment.

Best, Ludwig