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kusterlab / prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7
https://www.proteomicsdb.org/prosit/
Apache License 2.0
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Prosit error : server proteomicsdb.org:8500 unavailable with Skyline #62

Closed MS4MS closed 3 years ago

MS4MS commented 3 years ago

Hello,

When I am trying to build my library directly in Skyline, there is an error message, the server is unavailable : What can I do ?

Skyline

Status(StatusCode=Unavailable, Detail="failed to connect to all addresses")

OK More Info

pwiz.Skyline.Model.Prosit.PrositException: Status(StatusCode=Unavailable, Detail="failed to connect to all addresses") ---> Grpc.Core.RpcException: Status(StatusCode=Unavailable, Detail="failed to connect to all addresses") à System.Runtime.ExceptionServices.ExceptionDispatchInfo.Throw() à System.Runtime.CompilerServices.TaskAwaiter.HandleNonSuccessAndDebuggerNotification(Task task) à Grpc.Core.Internal.AsyncCall2.UnaryCall(TRequest msg) à Grpc.Core.DefaultCallInvoker.BlockingUnaryCall[TRequest,TResponse](Method2 method, String host, CallOptions options, TRequest request) à Grpc.Core.Interceptors.InterceptingCallInvoker.b__3_0[TRequest,TResponse](TRequest req, ClientInterceptorContext2 ctx) à Grpc.Core.ClientBase.ClientBaseConfiguration.ClientBaseConfigurationInterceptor.BlockingUnaryCall[TRequest,TResponse](TRequest request, ClientInterceptorContext2 context, BlockingUnaryCallContinuation2 continuation) à Grpc.Core.Interceptors.InterceptingCallInvoker.BlockingUnaryCall[TRequest,TResponse](Method2 method, String host, CallOptions options, TRequest request) à Tensorflow.Serving.PredictionService.PredictionServiceClient.Predict(PredictRequest request, CallOptions options) dans C:\proj\skyline_20_2_x64\pwiz_tools\Skyline\ProtocolBuffers\GeneratedCode\PredictionServiceGrpc.cs:ligne 96 à Tensorflow.Serving.PredictionService.PredictionServiceClient.Predict(PredictRequest request, Metadata headers, Nullable1 deadline, CancellationToken cancellationToken) dans C:\proj\skyline_20_2_x64\pwiz_tools\Skyline\ProtocolBuffers\GeneratedCode\PredictionServiceGrpc.cs:ligne 86 à pwiz.Skyline.Model.Prosit.Models.PrositModel6.Predict(PredictionServiceClient predictionClient, TPrositIn inputData, CancellationToken token) dans C:\proj\skyline_20_2_x64\pwiz_tools\Skyline\Model\Prosit\Models\PrositModel.cs:ligne 230 --- Fin de la trace de la pile d'exception interne --- à pwiz.Skyline.Model.Prosit.Models.PrositModel6.Predict(PredictionServiceClient predictionClient, TPrositIn inputData, CancellationToken token) dans C:\proj\skyline_20_2_x64\pwiz_tools\Skyline\Model\Prosit\Models\PrositModel.cs:ligne 234 à pwiz.Skyline.Model.Prosit.Models.PrositModel6.PredictBatches(PredictionServiceClient predictionClient, IProgressMonitor progressMonitor, IProgressStatus& progressStatus, SrmSettings settings, IList`1 inputs, CancellationToken token) dans C:\proj\skyline_20_2_x64\pwiz_tools\Skyline\Model\Prosit\Models\PrositModel.cs:ligne 314 à pwiz.Skyline.Model.Prosit.PrositLibraryBuilder.BuildLibraryOrThrow(IProgressMonitor progress, IProgressStatus& progressStatus) dans C:\proj\skyline_20_2_x64\pwiz_tools\Skyline\Model\Prosit\PrositLibraryBuilder.cs:ligne 112 à pwiz.Skyline.Model.Prosit.PrositLibraryBuilder.BuildLibrary(IProgressMonitor progress) dans C:\proj\skyline_20_2_x64\pwiz_tools\Skyline\Model\Prosit\PrositLibraryBuilder.cs:ligne 68

LLautenbacher commented 3 years ago

Hi,

the prosit server is online and available and with the newest skyline version (20.2.0.343) I cannot replicate your issue. I think you are already in contact with the skyline team. They should be able to resolve this issue for you.

Best, Ludwig