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kuwisdelu / Cardinal

Mass spectrometry imaging toolbox
http://www.cardinalmsi.org
Artistic License 2.0
42 stars 14 forks source link

error for image in 3.7.0 version. #38

Closed YzGLab closed 5 months ago

YzGLab commented 5 months ago

Dear

pig206 <- CardinalWorkflows::exampleMSIData("pig206") pig206 MSImagingExperiment with 10200 features and 4959 spectra spectraData(1): intensity featureData(1): mz pixelData(3): x, y, run coord(2): x = 10...120, y = 1...66 runNames(1): PIGII_206 mass range: 150.0833 to 1000.0000 centroided: FALSE image(pig206, mz=885.5, tolerance=0.5, units="mz") Error in eval_exprs(parse$lhs, spectraData(x), i1 = i, i2 = subset, margin = 1L) : could not find function "eval_exprs" No matter how I fixed it, it still in the version. other version is ok , such as my first 3.4.3~

YzGLab commented 5 months ago

sessionInfo() R version 4.4.0 (2024-04-24) Platform: x86_64-pc-linux-gnu Running under: Ubuntu 20.04.6 LTS

Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3; LAPACK version 3.9.0

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8
[8] LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

time zone: Asia/Shanghai tzcode source: system (glibc)

attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base

other attached packages: [1] Cardinal_3.7.0 S4Vectors_0.42.0 BiocParallel_1.38.0 BiocGenerics_0.50.0 ProtGenerics_1.36.0

loaded via a namespace (and not attached): [1] nlme_3.1-164 cli_3.6.2 rlang_1.1.3 DBI_1.2.2 tiff_0.1-12 png_0.1-8 RCurl_1.98-1.14 htmltools_0.5.8.1 ontologyIndex_2.12 Biobase_2.64.0
[11] locfit_1.5-9.9 grid_4.4.0 abind_1.4-5 bitops_1.0-7 fastmap_1.2.0 compiler_4.4.0 codetools_0.2-20 CardinalIO_1.2.1 irlba_2.3.5.1 htmlwidgets_1.6.4 [21] fftwtools_0.9-11 EBImage_4.46.0 rstudioapi_0.16.0 lattice_0.22-6 digest_0.6.35 matter_2.6.1 parallel_4.4.0 Matrix_1.7-0 tools_4.4.0 jpeg_0.1-10
[31] biglm_0.9-2.1

kuwisdelu commented 5 months ago

The GitHub version is unstable and will break things without warning.

If you want to use it, install the GitHub version of matter as well.