importIsoformExpression ERROR

[dancortes22]

trying to import my files

my_test <- importIsoformExpression(
  parentDir = "isoform_raw_data"
)

this is the error I get

Error in importIsoformExpression(parentDir = "isoform_raw_data") : No subdirecories were found in the supplied folder. Please check and try again.

my files look like this:

4_GT20-16845_ATGCTAGA-AAGTAGTT_S61_L003.isoforms.results According to what I read, It should be able to recognize isoforms.results suffix but it doesn't. Any help?

thanks so much

sessionInfo() R version 4.0.2 (2020-06-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.7

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods base

other attached packages: [1] IsoformSwitchAnalyzeR_1.12.0 ggplot2_3.3.3 DEXSeq_1.36.0 RColorBrewer_1.1-2 DESeq2_1.30.1 SummarizedExperiment_1.20.0 [7] GenomicRanges_1.42.0 GenomeInfoDb_1.26.7 MatrixGenerics_1.2.1 matrixStats_0.59.0 BiocParallel_1.24.1 AnnotationDbi_1.52.0
[13] IRanges_2.24.1 S4Vectors_0.28.1 edgeR_3.32.1 limma_3.46.0 Biobase_2.50.0 BiocGenerics_0.36.1

loaded via a namespace (and not attached): [1] colorspace_2.0-1 hwriter_1.3.2 ellipsis_0.3.2 futile.logger_1.4.3 XVector_0.30.0 rstudioapi_0.13
[7] farver_2.1.0 bit64_4.0.5 interactiveDisplayBase_1.28.0 fansi_0.5.0 xml2_1.3.2 splines_4.0.2
[13] tximport_1.18.0 cachem_1.0.5 geneplotter_1.68.0 knitr_1.33 jsonlite_1.7.2 Rsamtools_2.6.0
[19] annotate_1.68.0 dbplyr_2.1.1 shiny_1.6.0 readr_1.4.0 BiocManager_1.30.15 compiler_4.0.2
[25] httr_1.4.2 lazyeval_0.2.2 assertthat_0.2.1 Matrix_1.2-18 fastmap_1.1.0 cli_2.5.0
[31] later_1.2.0 formatR_1.11 htmltools_0.5.1.1 prettyunits_1.1.1 tools_4.0.2 gtable_0.3.0
[37] glue_1.4.2 GenomeInfoDbData_1.2.4 reshape2_1.4.4 dplyr_1.0.6 rappdirs_0.3.3 tinytex_0.32
[43] Rcpp_1.0.6 DRIMSeq_1.18.0 jquerylib_0.1.4 vctrs_0.3.8 Biostrings_2.58.0 rtracklayer_1.50.0
[49] xfun_0.23 stringr_1.4.0 mime_0.10 lifecycle_1.0.0 ensembldb_2.14.1 statmod_1.4.36
[55] XML_3.99-0.6 AnnotationHub_2.22.1 zlibbioc_1.36.0 scales_1.1.1 BSgenome_1.58.0 ProtGenerics_1.22.0
[61] promises_1.2.0.1 hms_1.1.0 AnnotationFilter_1.14.0 lambda.r_1.2.4 yaml_2.2.1 curl_4.3.1
[67] memoise_2.0.0 gridExtra_2.3 sass_0.4.0 biomaRt_2.46.3 stringi_1.6.2 RSQLite_2.2.7
[73] BiocVersion_3.12.0 genefilter_1.72.1 GenomicFeatures_1.42.3 rlang_0.4.11 pkgconfig_2.0.3 bitops_1.0-7
[79] evaluate_0.14 lattice_0.20-41 purrr_0.3.4 labeling_0.4.2 GenomicAlignments_1.26.0 bit_4.0.4
[85] tidyselect_1.1.1 plyr_1.8.6 magrittr_2.0.1 R6_2.5.0 generics_0.1.0 DelayedArray_0.16.3
[91] DBI_1.1.1 pillar_1.6.1 withr_2.4.2 survival_3.1-12 RCurl_1.98-1.3 tibble_3.1.2
[97] tximeta_1.8.5 crayon_1.4.1 futile.options_1.0.1 utf8_1.2.1 BiocFileCache_1.14.0 rmarkdown_2.8
[103] progress_1.2.2 locfit_1.5-9.4 grid_4.0.2 blob_1.2.1 digest_0.6.27 xtable_1.8-4
[109] VennDiagram_1.6.20 httpuv_1.6.1 openssl_1.4.4 munsell_0.5.0 bslib_0.2.5.1 askpass_1.1

[kvittingseerup]

Seems like the same problem mentioned here. Let me know if it is not :).

[CWYuan08]

@kvittingseerup hi I have the same error but can't open the link above, whats the solution? Many thanks.