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kvittingseerup / IsoformSwitchAnalyzeR

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
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error about isoformSwitchTestDEXSeq #13

Closed Indigofera closed 6 years ago

Indigofera commented 6 years ago

Hi, When I tried to identify Isoform Switches, I used Isoform Switches via DEXSeq. But I got this error: "Error in isoformSwitchTestDEXSeq(switchAnalyzeRlist = exampleSwitchListFiltered, : could not find function "isoformSwitchTestDEXSeq".

Thank you.

kvittingseerup commented 6 years ago

Which version of IsoformSwitchAnalyzeR are you using?

You can check it by running the following in your R terminal

packageVersion("IsoformSwitchAnalyzeR")
Indigofera commented 6 years ago

version '1.3.7'

kvittingseerup commented 6 years ago

That sounds very strange. How did you install it?

Could you try to reinstall it with this command:

BiocManager::install("IsoformSwitchAnalyzeR", version = "devel")

And remember to update all packages when asked.

Indigofera commented 6 years ago

I reinstall and update all package but I got the same error.

Indigofera commented 6 years ago

I restarted R then it worked.

kvittingseerup commented 6 years ago

Good to hear you got it working.

If you have more problems please dont hesitate to contact me again.