Closed HAFSAKHAN9 closed 1 year ago
your column names for isoformCountMatrix need to exactly match the sample IDs, so I would try removing FPKM from the column names or adding the FPKM prefix to your sampleIDs in the design matrix.
You are giving strings as input instead of the actual data 🙂
Step 1 of 7: Checking data... Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function '%in%': dim(X) must have a positive length. I have small set of data, 4 samples. I have repeatedly checked the data, it is correct. what am I doing wrong? switchAnalyzeRlist <- importRdata( isoformCountMatrix = "fpkm_matrix.txt", designMatrix = "design_matrix.txt", isoformExonAnnoation = "annotation.gtf" ) design_Matrix.txt fpkm_matrix.txt