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kvittingseerup / IsoformSwitchAnalyzeR

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
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Gene position for eqtl analysis #207

Closed sumageb closed 2 months ago

sumageb commented 11 months ago

Hi, I am working on RNA-seq data from wheat. I used stringtie for assembly and followed the IsoformSwitchanalyzeR manual to fix the stringtie issue. My ultimate goal is to do eqtl analysis; for that, I need gene position. I could not find an option from where I can get the gene position along with the id.

I appreciate your help.

chunxubioinfor commented 2 months ago

Hi! I guess you have already dealt with this problem. But I just want to say that you could get gene position from the gtf file used when you import the stringtie file. I will close this issue and if you have further problems, please feel free to open a new one.