How do I get exon inclusion level of alternative splicing events in each group

kvittingseerup / IsoformSwitchAnalyzeR

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

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How do I get exon inclusion level of alternative splicing events in each group #215

Closed orange-3711 closed 2 months ago

orange-3711 commented 8 months ago

Hi , I'm sorry that I don't have a good enough understanding of alternative splicing events， how do I get the information in each group? Looking forward to your reply!

kvittingseerup commented 8 months ago

I don't think you can. IsoformSwitchAnalyzeR uses an isoform-based approach for the analysis since it allows for detailed biological insights (protein domains etc.).

This means that there is no group-based information about alternative splicing.