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kvittingseerup / IsoformSwitchAnalyzeR

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
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Joining multiple switch lists #240

Closed rugilemat closed 1 month ago

rugilemat commented 1 month ago

Hi,

I want to compare how the switching results compare between using different isoform identification tools for long reads. I have run IsoformSwitchAnalyzeR on my datasets to compare the conditions between them but I'd like to join the data from all three lists together into one IsofromSwitchRList object to be able to plot them together at the gene level.

I tried cbind but I ended up with a large matrix which is not recognised by SwitchPlot.

Any advice would be appreciated!

EDIT: I have figured out a workaround.