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kvittingseerup / IsoformSwitchAnalyzeR

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
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Visualization problem #243

Open dawangran opened 4 months ago

dawangran commented 4 months ago

Hello, when I was visualizing, I could not distinguish the 5 'utr area, how should I look at this diagram?

dawangran commented 4 months ago

L.isoformswith.pou5f3.pdf

chunxubioinfor commented 4 months ago

Hi, currently it's not possible to directly identify which end is the 5' UTR. However, I can tell you that the left end corresponds to the smaller coordinate. You might be able to verify it using this information. Let me know if you have further questions.

kvittingseerup commented 4 months ago

The 5’ end and 3’end can be identified via the arrows in the intron that show the direction of the transcript. As default the 5’ is always plotted on the left side and 3’ at the right side.

The 5’UTR difference are clearly visible. Maybe you are looking at the 3’end?

Cheers Kristoffer

ons. 29. maj 2024 kl. 14.22 skrev Chunxu Han @.***>:

Hi, currently it's not possible to directly identify which end is the 5' UTR. However, I can tell you that the left end corresponds to the smaller coordinate. You might be able to verify it using this information. Let me know if you have further questions.

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