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kwongj / cfml-maskrc

Masks recombinant regions in an alignment based on ClonalFrameML output
GNU General Public License v2.0
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masking recombination in xmfa #1

Open rndg20 opened 8 years ago

rndg20 commented 8 years ago

Hi

I've used your code to mask recombination regions in MSA, and it works really well (thank you!). However, I am currently working with a gene alignment which is in xmfa format. CFML has given me the coordinates of the recombination regions and I was wondering if there is a way to use your code to mask these regions in the xmfa?

kwongj commented 8 years ago

Yes it should be possible, I just haven't implemented it. I will add it to a list of potential enhancements for the next version.