kylessmith / SomVarIUS

Somatic variant identification from unpaired samples
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Exit code 137 on call_mutations and pickle #8

Open sean-cho opened 3 years ago

sean-cho commented 3 years ago

Hello and thanks for your work on this software. I've been trying to run SomVarIUS and have been receiving 137 exit codes for call_mutations and pickle on dbSNP v153. I'm running this on compute nodes with 72 cores and 196 GB RAM. I've also ran call_mutations on a 150bp window that I know there is a variant in but still received the 137 error code.

137 usually points to a memory issue, and I was wondering if you think the same. Do you have any idea what's happening, and advice on how to proceed? Thanks!