à python setup.py egg_info did not run successfully.
â exit code: 1
â°â> [12 lines of output]
Traceback (most recent call last):
File "", line 2, in
File "", line 34, in
File "/tmp/pip-install-7gmptdg6/somvarius_2656a257901e4c10855b56e065b03599/setup.py", line 42, in
ext_modules=cythonize(extensions),
File "/data/miniconda3/envs/somvarius/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1010, in cythonize
module_list, module_metadata = create_extension_list(
File "/data/miniconda3/envs/somvarius/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 845, in create_extension_list
for file in nonempty(sorted(extended_iglob(filepattern)), "'%s' doesn't match any files" % filepattern):
File "/data/miniconda3/envs/somvarius/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 117, in nonempty
raise ValueError(error_msg)
ValueError: 'SomVarIUS/SomVarIUS_calling.pyx' doesn't match any files
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
à Encountered error while generating package metadata.
â°â> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
I have python 3.10 installed and I was requested to also get the python modules cython, numpy, and pysam, which were successfully installed. Thanks for your help!
Hello,
I am trying to install 'SomVarIUS' via the pip installation route, but I am encountering the following error:
(somvarius) [ks6@h-login SomVarIUS]$ pip install SomVarIUS Collecting SomVarIUS Using cached SomVarIUS-1.1.tar.gz (179 kB) Preparing metadata (setup.py) ... error error: subprocess-exited-with-error
à python setup.py egg_info did not run successfully. â exit code: 1 â°â> [12 lines of output] Traceback (most recent call last): File "", line 2, in
File "", line 34, in
File "/tmp/pip-install-7gmptdg6/somvarius_2656a257901e4c10855b56e065b03599/setup.py", line 42, in
ext_modules=cythonize(extensions),
File "/data/miniconda3/envs/somvarius/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1010, in cythonize
module_list, module_metadata = create_extension_list(
File "/data/miniconda3/envs/somvarius/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 845, in create_extension_list
for file in nonempty(sorted(extended_iglob(filepattern)), "'%s' doesn't match any files" % filepattern):
File "/data/miniconda3/envs/somvarius/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 117, in nonempty
raise ValueError(error_msg)
ValueError: 'SomVarIUS/SomVarIUS_calling.pyx' doesn't match any files
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed
à Encountered error while generating package metadata. â°â> See above for output.
note: This is an issue with the package mentioned above, not pip. hint: See above for details.
I have python 3.10 installed and I was requested to also get the python modules cython, numpy, and pysam, which were successfully installed. Thanks for your help!