Make sure gridsearch does not get applied to the medial wall - Githubissues

kymata-atlas / kymata-core

Core Kymata codebase, including statistical analysis and plotting tools

https://kymata.org

MIT License

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Make sure gridsearch does not get applied to the medial wall #166

Open neukym opened 6 months ago

neukym commented 6 months ago

If #165 works, then the gridsearch does not need to be run to the hexels on the media wall.

In particular:

remove the fsaverage medial wall hexels from the search after averating and before the gridsearch, and then add then channels back in, with p-value=1 to them for all latencies after the gridsearch is completed.
make sure that the #SBATCH --mem=240G memory usage drops from 240GB down to a more suitable number in order that more runs can be on the queue nodes at once (currently 3 only allowed due to per user memory usage limits)

neukym commented 2 months ago

Be aware that interim morph maps .npys need to be deleted (potentially)