Removed the comment # todo - AT has used the commandline version to create the BEMSs: do and then compare from create_current_estimation_prerequisites() as part of #173/#184.
This includes Flash BEMs.
There's a large commented-out section which should be removed or implemented.
Contexts:
# Computing the 'BEM' surfaces (needed for coregistration to work)
for participant in list_of_participants:
# # andy is using:
# https://imaging.mrc-cbu.cam.ac.uk/meg/AnalyzingData/MNE_MRI_processing
# # todo - AT has used the commandline version to create the BEMSs: do and then compare
#
# if mri_structural_type == 'T1':
# mne.bem.make_watershed_bem( # for T1; for FLASH, use make_flash_bem instead
# subject=participant,
# subjects_dir=mri_structurals_directory,
# copy=True,
# overwrite=True,
# show=True,
# )
#
# mne.bem.make_scalp_surfaces(
# subject=participant,
# subjects_dir=mri_structurals_directory,
# no_decimate=True,
# force=True,
# overwrite=True,
# )
# elif mri_structural_type == 'Flash':
# # todo add & test flash
# # mne.bem.make_flash_bem().
# print("Flash not yet implemented.")
Removed the comment
# todo - AT has used the commandline version to create the BEMSs: do and then compare
fromcreate_current_estimation_prerequisites()
as part of #173/#184.This includes Flash BEMs.
There's a large commented-out section which should be removed or implemented.
Contexts: