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kymata-atlas / kymata-core

Core Kymata codebase, including statistical analysis and plotting tools
https://kymata.org
MIT License
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Pull out boilerplate code in invokers into a new function #212

Closed neukym closed 6 months ago

neukym commented 6 months ago

Four of the invokers have the following boilerplate code - can we move this text to a single function:

    if config['data_location'] == "local":
        data_root_dir = str(Path(Path(__file__).parent.parent, "kymata-toolbox-data", "emeg_study_data")) + "/"
    elif config['data_location'] == "cbu":
        data_root_dir = '/imaging/projects/cbu/kymata/data/'
    elif config['data_location'] == "cbu-local":
        data_root_dir = '//cbsu/data/imaging/projects/cbu/kymata/data/'
    else:
        raise Exception("The 'data_location' parameter in the config file must be either 'cbu' or 'local' or 'cbu-local'.")