I have also been researching the GSE139136 scATAC-seq data recently. However, after downloading the files from SRA and running fastq-dump, I only obtained the paired-end sequencing files SRR10315835_1.fastq.gz and SRR10315835_2.fastq.gz. However, for cellranger-atac count, R1, R2, and R3 FASTQ files are all mandatory for the analysis. Could you let me know where I might have gone wrong or how you resolved this issue? I would greatly appreciate it.
Hello,
I have also been researching the GSE139136 scATAC-seq data recently. However, after downloading the files from SRA and running fastq-dump, I only obtained the paired-end sequencing files SRR10315835_1.fastq.gz and SRR10315835_2.fastq.gz. However, for cellranger-atac count, R1, R2, and R3 FASTQ files are all mandatory for the analysis. Could you let me know where I might have gone wrong or how you resolved this issue? I would greatly appreciate it.