Please provide a reproducible example and test it

gdevenyi commented 9 months ago

Please get a brand new empty Linux install and develop/test the steps needed to get from that state to running the code and reproducing the outputs.

The current state of the README it is not possible to do this.

karllandheer commented 8 months ago

Yes, or please provide a working Docker image?

lab-smile commented 8 months ago

You can click the Release button for our recent release with the pretrained model.

Ruogu Fang, Ph.D. | Associate Professor | Pruitt Family Endowed Fellow

University of Florida | J. Crayton Pruitt Family Department of Biomedical Engineering

Herbert Wertheim College of Engineering

J287 Biomedical Science Building

1275 Center Dr. | Gainesville, FL 32611

•(352) 294-1375 (will forward to cell)

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Yes, or please provide a working Docker image?

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karllandheer commented 8 months ago

Hello, I see that and thank you for making it available. From the instructions given I have no idea how to actually run the available software. Here's a git repo on similar work (different structures but similar use case) that gives excellent documentation and working examples:

https://github.com/spinalcordtoolbox/spinalcordtoolbox