search

labda / DINTO

The Drug-Drug Interactions Ontology
2 stars 8 forks source link

DINTO purl does not resolve #1

Open cmungall opened 8 years ago

cmungall commented 8 years ago

Hi, we have a number of problems with this ontology for the OBO registry and its downstream applications, see: https://github.com/OBOFoundry/OBOFoundry.github.io/issues/208

  1. The DINTO_2 ontology doesn't conform to http://obofoundry.org/id-policy.html - the URI must be all lowercase
  2. The URI for the ontology doesn't resolve

For 2, there needs to be a URL from which an (unzipped) RDF/XML-OWL version of the ontology can be obtained. I note that your ontology is too large to fit into github unzipped. I can provide a service that will serve up the correct file from your github if you like.

Not required by OBO, but I recommend that you don't keep different versions of your ontology checked in to github in different folders. Git and GitHub have excellent versioning and release mechanisms I recommend using them. There are a number of different workflows here, but the simplest is that you keep the working version on master and then click on the "release" button on github when you want to make a release.

labda commented 8 years ago

Dear Chris,

Thank you for pointing this out. We will try to overcome these issues as soon as possible. I would be very grateful if you could tell me about the service you suggest for the ontology.

Thanks, Maria

cmungall commented 8 years ago

You can see how to register your ontology for the OBO central build here:

http://obofoundry.org/faq/what-is-the-build-field.html

This sounds a bit convoluted, but we could set up a job on our jenkins server that upacks the zip...

but I think we need to find you a more scalable approach. You want to be able to manage your files in github without zipping them. I recommend modularization.

cmungall commented 8 years ago

For hints on how to structure your github repo, see also https://douroucouli.wordpress.com/2015/12/16/creating-an-ontology-project-an-update/

cmungall commented 8 years ago

Is DINTO still maintained?

labda commented 8 years ago

Hi Chris,

Yes, it is. How can I help you?

Maria

On 4 October 2016 at 21:38, Chris Mungall notifications@github.com wrote:

Is DINTO still maintained?

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/labda/DINTO/issues/1#issuecomment-251505994, or mute the thread https://github.com/notifications/unsubscribe-auth/ALAI0G7soZEDCI9Yianfd6WsDuMDgodRks5qwrk3gaJpZM4HPRiE .

cmungall commented 8 years ago

Hi Maria,

Currently the OBO purl is not resolving. Can you provide a stable URL (for example, a raw github URL) that resolves to the latest version of your ontology?

cmungall commented 7 years ago

We will have to remove DINTO from OBO unless this is fixed

labda commented 7 years ago

Hi Chris, I understand. I'll fix it as soon as possible.

Cheers, Maria

cmungall commented 5 years ago

Any progress on this?

cmungall commented 4 years ago

Hi Maria, any update on this?