Errors on install from github

Installing from pip:

ERROR: Could not find a version that satisfies the requirement dgl==0.6.1 (from rossmann-toolbox) (from versions: 0.1.0, 0.1.2, 0.1.3, 1.0.0, 1.0.1, 1.0.4, 1.1.0, 1.1.1, 1.1.2)
ERROR: No matching distribution found for dgl==0.6.1

When dgl changed to 1.1.2, installing fails at bliss:


        /tmp/pip-install-ovktqweu/blis_571b05cef4074ec29d928282a71c916e/blis/_src/include/linux-x86_64/blis.h:4151:15: warning: ‘bli_is_odd’ defined but not used [-Wunused-function]
         static bool_t bli_is_odd( gint_t a )
                       ^~~~~~~~~~
        /tmp/pip-install-ovktqweu/blis_571b05cef4074ec29d928282a71c916e/blis/_src/include/linux-x86_64/blis.h:4132:16: warning: ‘bli_round_to_mult’ defined but not used [-Wunused-function]
         static guint_t bli_round_to_mult( guint_t val, guint_t mult )
                        ^~~~~~~~~~~~~~~~~
        /tmp/pip-install-ovktqweu/blis_571b05cef4074ec29d928282a71c916e/blis/_src/include/linux-x86_64/blis.h:4125:15: warning: ‘bli_round’ defined but not used [-Wunused-function]
         static double bli_round( double a )
                       ^~~~~~~~~
        /tmp/pip-install-ovktqweu/blis_571b05cef4074ec29d928282a71c916e/blis/_src/include/linux-x86_64/blis.h:1644:13: warning: ‘bli_obj_init_subpart_from’ defined but not used [-Wunused-function]
         static void bli_obj_init_subpart_from( obj_t* a, obj_t* b )
                     ^~~~~~~~~~~~~~~~~~~~~~~~~
        error: command '/usr/bin/gcc' failed with exit code 1
        [end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
    ERROR: Failed building wheel for blis
    Running setup.py clean for blis
  Failed to build preshed thinc blis
  ERROR: Could not build wheels for preshed, thinc, blis, which is required to install pyproject.toml-based projects
  [end of output]


Installing bliss using pip (as well as python-dev) did not fix the issue

not sure if this is the ~best~ answer to your question (I only started coding a few months ago), but I looked at their .toml and .lock files for all the packages required, I found it best to make a venv or conda env with python =3.7. Then you can do

wget https://files.pythonhosted.org/packages/71/c4/ce24841375cf4393787dbf9a645e271c19a03d2d9a0e5770b08ba76bcfde/dgl-0.6.1-cp37-cp37m-manylinux1_x86_64.whl

then pip install dgl-0.6.1-cp37-cp37m-manylinux1_x86_64.whl to get the specific dgl you are looking for! There may be some other dependencies that come up that you have to specifically install prior to pip install git+https://github.com/labstructbioinf/rossmann-toolbox.git , but I hope that helps :-)

labstructbioinf / rossmann-toolbox

Errors on install from github #9