labsyspharm mcmicro issues

labsyspharm / mcmicro

Multiple-choice microscopy pipeline

https://mcmicro.org/

MIT License

97 stars 57 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Clarification on Cell-Type Assignment Process in NaiveStates: Role of Gaussian Mixture Models and Naive Bayes?

#555 ke2rchan closed 6 days ago
3
Input Image requirements/ Unmicst Scaling Factor Calculation Help Required

#554 ke2rchan closed 1 week ago
0
Naivestates-model: Parameter Not Found

#553 ke2rchan closed 1 week ago
2
Update mcquant version to 1.6.0

#552 jmuhlich closed 1 month ago
0
MCMICRO from dearrayed cores

#551 josenimo closed 1 month ago
2
Speed up run?

#550 wesleylcai closed 1 month ago
6
Fix nextflow_schema

#549 adamjtaylor closed 1 month ago
0
Working with IF Images from NanoString's GeoMx

#548 SalimSoria opened 2 months ago
3
segementation using cell pose

#547 yas92 opened 2 months ago
1
Using GPU resources for Unmisct in MCMICRO

#546 SalimSoria closed 2 months ago
16
CODEX Raw data

#545 andreevg04 opened 3 months ago
8
P21 e04 sonja hn26 2

#544 josenimo closed 3 months ago
0
Cell segmentation is incorrect on Immunohistochemical staining picture

#543 egg124 closed 3 months ago
3
Dynamic samplename in fileseries/filepattern expressions

#542 ArtemSokolov closed 3 months ago
0
Does this pipeline support PhenoCycler-Fusion Codex format?

#541 liuyangzzu opened 4 months ago
7
Added support for multiple samples in raw/

#540 ArtemSokolov closed 4 months ago
0
Install/Tutorial -- it would be helpful to indicate disk requirements for exemplar cases

#539 GaryAitken opened 4 months ago
0
Update tutorial.md

#538 hxu-hms closed 4 months ago
0
Segmentation:Unmicst tensorflow error

#537 AhmedElshahedd closed 3 months ago
6
Bump ashlar to v1.18.0

#536 jmuhlich closed 5 months ago
0
Added support for ASHLAR's fileseries/filepattern feature

#535 ArtemSokolov closed 5 months ago
0
ASHLAR/MCQUANT modules

#534 MDHowe4 opened 5 months ago
14
Update O2.md to fix broken link

#533 hxu-hms closed 5 months ago
0
Version bump for s3seg

#532 ArtemSokolov closed 6 months ago
0
Exemplar-001 nuclei segmentation is identical to the cell segmentation

#531 LucaMarconato closed 6 months ago
5
Parameterized publishing of non-QC non-provenance files

#530 ArtemSokolov closed 6 months ago
2
Adding new uuid to recyezed image

#529 simonwarchol closed 7 months ago
0
Backsub version bump and updated documentation

#528 kbestak closed 7 months ago
1
Caching segmentation models

#527 MDHowe4 closed 7 months ago
5
unstiched image

#526 Elena983 opened 8 months ago
11
Added instructions for working with pre-stitched images

#525 ArtemSokolov closed 8 months ago
2
MCMICRO: Cellpose Issue

#524 virlyananda opened 8 months ago
3
Recyze updates

#523 jmuhlich closed 8 months ago
0
Roadie updates

#522 jmuhlich closed 8 months ago
0
The input format of CODEX Image to process MCMICRO

#521 Yuchen588 opened 9 months ago
4
MCMICRO not recognizing params.yml file

#520 smith6jt-cop closed 9 months ago
6
Ashlar stitch and register error

#519 ShihongWu closed 7 months ago
15
Update defaults.yml

#518 clarenceyapp closed 10 months ago
0
Update s3seg/large version and imagej-rolling-ball version

#517 Yu-AnChen closed 10 months ago
0
Add ImageJ rolling ball background subtraction module

#516 Yu-AnChen closed 10 months ago
0
Mesmer Process Fails in Nextflow with Singularity Container

#515 ShihongWu closed 10 months ago
5
setup cellpose for usage within mcmicro

#514 VictorDidier closed 10 months ago
1
Make the output of downstream modules Minerva-story ready

#513 ciszew opened 11 months ago
8
Input structure to run .nd2 files as FOVs

#512 Boehmin opened 11 months ago
4
Add Nextflow schema

#511 adamjtaylor closed 1 year ago
0
Mcmicro macsima roi

#510 josenimo closed 1 year ago
1
Handling membrane images in Mesmer

#509 ArtemSokolov closed 1 year ago
0
Mesmer Segmentation with a membrane channel

#508 ArozHada closed 1 year ago
2
Add Sage-specific config

#507 adamjtaylor closed 1 year ago
0
Windows Remote Drive Issue: Failing to create symbolic link : Operation not permitted

#506 josenimo opened 1 year ago
2