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labsyspharm / minerva-story

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
https://minerva.im
MIT License
50 stars 14 forks source link

openslides module not found #70

Open CReihsmann opened 2 years ago

CReihsmann commented 2 years ago

Tried to run the minerva author program but it keeps failing. All necessary packages and environments installed and activated. Whenever it tries importing the openslides module in the app.py file the filepath doesn't work and it reports that the selected module was not found. I have checked the conda environments and it is in there so I'm not sure what the issue is.

thejohnhoffer commented 2 years ago

Hi there! Thanks for your use of Minerva Author. OpenSlide also contains some non-python components that must be installed on your system.

For now, I would recommend checking out the o2 branch, where OpenSlide is not used or needed.

CReihsmann commented 2 years ago

Thank you. Could you direct me to that branch? I don't see where that is.

Also, in regards to openslides, maybe I'm not understanding the instructions on the minerva-author repository (sorry for putting this issue on the minerva-story side). If you're referring to placing "bin" directory folder (extracted from the latest 64-bit windows binary) in the src file, I believe I've done that, unless I've misunderstood the directions. Thanks!

jmuhlich commented 2 years ago

What kind of image files will you be using? We might be able to develop a workaround depending on whether you have OME-TIFF files or something else.

jmuhlich commented 2 years ago

Are you running the pre-built release available from https://github.com/labsyspharm/minerva-author/releases ? That should solve the package and environment issues.