Data Import from MCMICRO path (local/remote) for Minerva Analysis Tools

labsyspharm / minerva_analysis

MIT License

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Data Import from MCMICRO path (local/remote) for Minerva Analysis Tools #94

Open kruegert opened 2 years ago

kruegert commented 2 years ago

Instead of specifying image, mask, and single-cell csv file locations for the project import individually, allow the user to point to an mcmicro output folder. Upload then follows mcmicro subfolder and file naming conventions.

kruegert commented 2 years ago

Added form validation (client side - if fields are filled, and server side - if paths/files are existing).
Added mcmicro mode to load all from mcmicro output folder, following naming conventions

https://user-images.githubusercontent.com/31503434/167421848-73c94c6b-56e6-46f8-bffe-91fad042555b.mp4

Plan to add mcmicro bulk upload (given a parent folder scanning all mcmicro subfolders) for cohorts.