labsyspharm / palom

Piecewise alignment for layers of mosaics
MIT License
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Added function to work on CycIF images #8

Closed kbestak closed 1 year ago

kbestak commented 2 years ago

Added cycif.py script based on the svs.py script to run Palom on CycIF images - TIF files, multiple cycles, multiple channels, registration based on the nuclear channel. Added helper_cycif.py script based on the helper.py script to produce configuration yaml file for CLI. Added schemas for CycIF data. Added CLI usage. Updated README to explain usage of adapted functions.