New quantification fixes memory problems #7

It finished successfully on the largest image:
CondaValueError: prefix already exists: /home/ds230/.conda/envs/quantification

{'mask': '/n/scratch2/ds230/MouseModelData/H1_775/segmentation/H1_775/cellMask.tif', 'image': '/n/scratch2/ds230/MouseModelData/H1_775/registration/H1_775.ome.tif', 'channel_names': '/n/scratch2/ds230/MouseModelData/H1_775/markers.csv', 'output': '/n/scratch2/ds230/MouseModelData/H1_775/feature_extraction'}
Extracting single-cell data for /n/scratch2/ds230/MouseModelData/H1_775/registration/H1_775.ome.tif...
Current memory usage is 6060.95859MB; Peak was 7862.428485MB
Finished 0
Current memory usage is 6065.928479MB; Peak was 8142.639642MB
Finished 1
Current memory usage is 6070.897945MB; Peak was 8147.609316MB
Finished 2
Current memory usage is 6075.867178MB; Peak was 8152.578629MB
Finished 3
Current memory usage is 6080.836515MB; Peak was 8157.547934MB
Finished 4
Current memory usage is 6085.805748MB; Peak was 8162.517199MB
Finished 5
Current memory usage is 6090.778502MB; Peak was 8167.489953MB
Finished 6
Current memory usage is 6095.747735MB; Peak was 8172.459186MB
Finished 7
Current memory usage is 6100.717032MB; Peak was 8177.428419MB
Finished 8
Current memory usage is 6105.686353MB; Peak was 8182.397804MB
Finished 9
Current memory usage is 6110.655586MB; Peak was 8187.367037MB
Finished 10
Current memory usage is 6115.62482MB; Peak was 8192.336271MB
Finished 11
Current memory usage is 6120.594157MB; Peak was 8197.305608MB
Finished 12
Current memory usage is 6125.564119MB; Peak was 8202.274842MB
Finished 13
Current memory usage is 6130.533353MB; Peak was 8207.244804MB
Finished 14
Current memory usage is 6135.502699MB; Peak was 8212.21415MB
Finished 15
Current memory usage is 6140.472004MB; Peak was 8217.183383MB
Finished 16
Current memory usage is 6145.441238MB; Peak was 8222.152689MB
Finished 17
Current memory usage is 6150.4106MB; Peak was 8227.122051MB
Finished 18
Current memory usage is 6155.38MB; Peak was 8232.091283MB
Finished 19
Current memory usage is 6160.34923MB; Peak was 8237.060681MB
Finished 20
Current memory usage is 6165.318463MB; Peak was 8242.029914MB
Finished 21
Current memory usage is 6170.287841MB; Peak was 8246.999292MB
Finished 22
Current memory usage is 6175.257075MB; Peak was 8251.968526MB
Finished 23
Current memory usage is 5.411686MB; Peak was 8251.968526MB
Finished H1_775
labsyspharm / quantification

New quantification fixes memory problems #7 #10
