labsyspharm / scimap

Spatial Single-Cell Analysis Toolkit
https://scimap.xyz/
MIT License
71 stars 24 forks source link

Gating QC plots no longer implemented in scimap.pp.rescale() #105

Open CameronFRWatson opened 3 months ago

CameronFRWatson commented 3 months ago

We have recently been working to update scimap to 2.1.0 in our Galaxy implementation (currently at 0.17.7), and we noticed that the save_fig parameter is no longer available in the scimap.pp.rescale() function. We found this feature quite useful as a QC check for gating, and was curious why that feature might have been removed in later versions? Thanks!