Open adamjtaylor opened 1 year ago
This PR adds the spatial OBSM to the data object created by the sm.pp.mcmicro_to_scimap function, pulling coordinates from X_centroid and Y_centroid.
spatial
sm.pp.mcmicro_to_scimap
X_centroid
Y_centroid
This allows for scanpy visualizations such as sc.pl.embedding(adata, basis = 'spatial', color = 'leiden') to be run natively.
scanpy
sc.pl.embedding(adata, basis = 'spatial', color = 'leiden')
This PR adds the
spatialOBSM to the data object created by thesm.pp.mcmicro_to_scimapfunction, pulling coordinates fromX_centroidandY_centroid.This allows for
scanpyvisualizations such assc.pl.embedding(adata, basis = 'spatial', color = 'leiden')to be run natively.