This PR adds 2 optional arguments to sm.hl.classify
1)failed_labelstring gives the user the option to provide a label name for cells that failed classify
2) showPhenotypeLabelbool if set to to True will add a column [phenotype]_[label] to adata.obs, which appends the phenotype of each classified cell with an underscore to its classify_label (if collapse_failed is set to True, also appends the phenotype to its failed_label. If collapse_failed is set to False, original phenotype names will be preserved for cells that failed classify.)
To retain the original label column added by the function, set showPhenotypeLabel to False.
This PR adds 2 optional arguments to
sm.hl.classify1)failed_labelstring gives the user the option to provide a label name for cells that failed classify 2)showPhenotypeLabelbool if set to to True will add a column[phenotype]_[label]to adata.obs, which appends the phenotype of each classified cell with an underscore to itsclassify_label(ifcollapse_failedis set to True, also appends the phenotype to itsfailed_label. Ifcollapse_failedis set to False, original phenotype names will be preserved for cells that failed classify.)To retain the original
labelcolumn added by the function, set showPhenotypeLabel to False.