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labsyspharm / scimap

Spatial Single-Cell Analysis Toolkit
https://scimap.xyz/
MIT License
71 stars 24 forks source link

upgrade the latest version #97

Closed yas92 closed 4 months ago

yas92 commented 5 months ago

HI May I ask how to upgrade to the latest version in jupyter notebook since I have 1.3.2 version and some of tools (functions) are not able to use.

ajitjohnson commented 5 months ago

Hi @yas92 this applies to any package - pip install scimap --upgrade. If you are executing this command in jupyter notebook add a! in front -- !pip install scimap --upgrade

yas92 commented 5 months ago

@ajitjohnson thanks for your quick reply. I have errors in using some functions here. Capture

ajitjohnson commented 5 months ago

have you run sm.tl.spatial_pscore? The one that you have says that you are running the plotting function. If you haven't already (most likely the case), you will need to run the tool variant of the function that does the actual calculations.