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labsyspharm
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scimap
Spatial Single-Cell Analysis Toolkit
https://scimap.xyz/
MIT License
71
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spatial aggregate CLI
#63
amorje
closed
1 year ago
0
added help messages
#62
amorje
closed
1 year ago
0
adding CLI compatibility to foldchange.py
#61
amorje
closed
1 year ago
0
doc changes correction
#60
amorje
closed
1 year ago
0
umap plotting
#59
ajitjohnson
opened
1 year ago
0
doc changes to remaining files
#58
amorje
closed
1 year ago
0
doc changes
#57
amorje
closed
1 year ago
0
doc changes
#56
amorje
closed
1 year ago
0
Doc changes data types
#55
amorje
closed
1 year ago
0
Doc changes
#54
amorje
closed
1 year ago
0
changes to doc in preprocessing
#53
amorje
closed
1 year ago
0
doc change
#52
amorje
closed
1 year ago
0
Bump requests from 2.28.2 to 2.31.0
#51
dependabot[bot]
closed
7 months ago
1
Bump pymdown-extensions from 9.11 to 10.0
#50
dependabot[bot]
closed
1 year ago
0
Issues with ComBat feature:
#49
hegewisch15
opened
1 year ago
1
Visualization of a single category when plotting umap (sm.pl.umap)
#48
tuuliavallius
opened
1 year ago
0
Bump setuptools from 45.2.0 to 65.5.1
#47
dependabot[bot]
closed
1 year ago
1
Please provide a version cli flag to get package version
#46
luiskuhn
opened
1 year ago
2
Bump future from 0.18.2 to 0.18.3
#45
dependabot[bot]
closed
1 year ago
1
'adata = sm.tl.spatial_distance' runs into ValueError: need at most x handles....
#44
josenimo
closed
1 year ago
2
chore: update Dockerfile to reduce the image size
#43
tdurieux
closed
1 year ago
1
Bump certifi from 2021.10.8 to 2022.12.7
#42
dependabot[bot]
closed
1 year ago
0
supplying additional groupings
#41
jamesMo84
opened
1 year ago
2
Bump pillow from 9.1.1 to 9.3.0
#40
dependabot[bot]
closed
1 year ago
0
voronoi diagram supply axis
#39
jim-bo
opened
1 year ago
0
Bump jupyter-core from 4.9.2 to 4.11.2
#38
dependabot[bot]
closed
1 year ago
0
Bump joblib from 1.1.0 to 1.2.0
#37
dependabot[bot]
closed
1 year ago
0
is it possible to perform an integrated analysis of separated images?
#36
bugie19
opened
1 year ago
2
sm.pl.image_viewer works but the Napiri visualization wont pop up
#34
bugie19
closed
1 year ago
2
more options in sm.tl.spatial_count return?
#33
Isaacyz
opened
2 years ago
2
sm.pl.spatial_interaction: len(interaction_map.columns)
#32
Isaacyz
opened
2 years ago
1
Adjusting colors in scimap UMAP animation
#31
jnmark
opened
2 years ago
3
image_viewer and gate_finder do not work: type object 'SubControl' has no attribute 'SC_None'
#30
SarkkinenJ
closed
2 years ago
2
strange spatial_LDA -> spatial_cluster results
#28
yerahko
closed
2 years ago
5
spatial_LDA with KNN neighborhoods
#27
yerahko
closed
2 years ago
2
Bump pillow from 9.1.0 to 9.1.1
#26
dependabot[bot]
closed
2 years ago
0
Segmentation mask error in pl.image_viewer
#25
yerahko
closed
2 years ago
3
sm.tl.spatial_lda stores result in adata.uns not adata.obs
#24
marinabroz
closed
2 years ago
12
Bump nltk from 3.5 to 3.6.6
#23
dependabot[bot]
closed
2 years ago
1
Bump ipython from 7.19.0 to 7.31.1
#22
dependabot[bot]
closed
2 years ago
1
Bump pillow from 8.0.1 to 9.0.1
#21
dependabot[bot]
closed
2 years ago
1
Bump babel from 2.9.0 to 2.9.1
#20
dependabot[bot]
closed
2 years ago
1
Bump urllib3 from 1.26.2 to 1.26.5
#19
dependabot[bot]
closed
2 years ago
1
sm.pl.gate_finder
#18
sailseem
closed
2 years ago
6
install errors
#17
sailseem
closed
2 years ago
2
Unable to use sm.pl.image_viewer
#16
josenimo
closed
9 months ago
5
scimap to csv
#15
ajitjohnson
opened
2 years ago
0
sm.pl.foldchange runs into KeyError
#14
josenimo
closed
2 years ago
3
better lazy-loading image support in scimap.pl.image_viewer for ome-tiffs
#13
jmuhlich
opened
2 years ago
1
Fix negative values in ROI point text parsing
#12
Yu-AnChen
closed
2 years ago
0
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