search

lalamotlhabi / VIP_DataCurate-Upload

SMC_NAC datato curate then upload to vip
0 stars 0 forks source link

vip_smc_gsva_final.tab #1

Open lalamotlhabi opened 6 years ago

lalamotlhabi commented 6 years ago

newly updated annotation formats by George

lalamotlhabi commented 6 years ago

ex. on issues -feedback from George QC • GSVA data o “vip_smc_gsva.tab” is missing the column title row. o “vip_smc_gsva_final.tab” is missing value for “TYPE” in some rows. It should specify the name of the pathway/geneset such as “C2”. o “vip_smc_gsva_final.tab” is much smaller than “vip_smc_gsva.tab” and contains different data. o The “pathway_class” names are messy. I will curate these and provide a list.  I noticed that some genesets do not need to be loaded e.g. mouse. o Question for Julio – What did you do before to make these GSVA names more readable in the menu for “SMC_YBC”?

lalamotlhabi commented 6 years ago

retrieve table, go over the Pathway annotations update table -